Pubmed - import PMC and Grant data

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Created on 9 September 2019, about 6 years ago

Updated 13 April 2023, over 2 years ago

Import PMC and Grant data.
Example XML: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=30696927&rettype=xml

The XML PubMedArticleSet contains elements ArticleIdList and GrantList.

The ArticleIdList contains the PMC data:

<ArticleIdList>
   <ArticleId IdType="pmc">PMC6351661</ArticleId>
</ArticleIdList>

The GrantList contains the Grant data:

<GrantList CompleteYN="Y">
   <Grant>
      <GrantID>P30 DK020572</GrantID>
      <Acronym>DK</Acronym>
      <Agency>NIDDK NIH HHS</Agency>
      <Country>United States</Country>
   </Grant>
</GrantList>

✨ Feature request

Status

Active

Version

1.0

Component

Code

Created by

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!3Pubmed - import PMC and Grant data
Merged
🇺🇸United States byronveale
updated about 1 month ago

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Comment over 2 years ago →
🇺🇸United States byronveale
As a first step towards adding this functionality, I have come up with some code that adds a PubMed Central (PMCID) field, and populates it when importing references using PubMed lookup.

The patch I am attaching works in conjunction with a patch I added to a related Bibcite issue ✨ Add PubMed Central (PMC) field Fixed .

A sample to test with is PMID 26996306.
Merge request !33080219-pubmed---import: added PMCID (bibcite_pmcid) field; added function to... → (Merged) created by byronveale
Status changed to Needs review over 2 years ago12:42pm 14 April 2023
Comment over 2 years ago →
🇺🇸United States bkosborne New Jersey, USA
Status changed to RTBC over 1 year ago2:28pm 20 March 2024
Comment over 1 year ago →
🇺🇸United States byronveale
FYI, the code submitted to the related bibcite issue ✨ Add PubMed Central (PMC) field Fixed has been committed.

Also, we have been using this in Production on a platform with hundreds of sites for about a year now, so going out on a limb and marking this as RTBC.
Comment 11 months ago →
🇩🇰Denmark ressa Copenhagen
This is a great feature! Perhaps it can get committed?
Comment about 1 month ago →
System Message

bkosborne → committed a0fe1ecb on 2.0.x authored by byronveale →
Issue #3080219: added PMCID (bibcite_pmcid) field
Status changed to Fixed about 1 month ago5:32pm 8 September 2025
Comment about 1 month ago →
🇺🇸United States bkosborne New Jersey, USA
Comment about 1 month ago →
System Message
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