Pubmed - import PMC and Grant data

Created on 9 September 2019, almost 5 years ago
Updated 20 March 2024, 3 months ago

Import PMC and Grant data.
Example XML: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=30696927&rettype=xml

The XML PubMedArticleSet contains elements ArticleIdList and GrantList.

The ArticleIdList contains the PMC data:

<ArticleIdList>
   <ArticleId IdType="pmc">PMC6351661</ArticleId>
</ArticleIdList>

The GrantList contains the Grant data:

<GrantList CompleteYN="Y">
   <Grant>
      <GrantID>P30 DK020572</GrantID>
      <Acronym>DK</Acronym>
      <Agency>NIDDK NIH HHS</Agency>
      <Country>United States</Country>
   </Grant>
</GrantList>
✨ Feature request
Status

RTBC

Version

1.0

Component

Code

Created by

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  • πŸ‡ΊπŸ‡ΈUnited States byronveale

    As a first step towards adding this functionality, I have come up with some code that adds a PubMed Central (PMCID) field, and populates it when importing references using PubMed lookup.

    The patch I am attaching works in conjunction with a patch I added to a related Bibcite issue ✨ Add PubMed Central (PMC) field Fixed .

    A sample to test with is PMID 26996306.

  • @byronveale opened merge request.
  • Status changed to Needs review about 1 year ago
  • πŸ‡ΊπŸ‡ΈUnited States bkosborne New Jersey, USA
  • Status changed to RTBC 3 months ago
  • πŸ‡ΊπŸ‡ΈUnited States byronveale

    FYI, the code submitted to the related bibcite issue ✨ Add PubMed Central (PMC) field Fixed has been committed.

    Also, we have been using this in Production on a platform with hundreds of sites for about a year now, so going out on a limb and marking this as RTBC.

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