Change the deriver class of a menu link

Problem/Motivation

We need to remove some of the admin toolbar links for our project. I've attempted to override the 'admin_toolbar_tools.extra_links' deriver class, "ExtraLinks", with a custom one. One thing I tried is to define the same menu link in the menu.yml file in my custom module, changing the deriver class, but I think this is not correct, is it a better way to do it?

Thanks in advance.