Settings for taxonomy term are kept in "tvi.taxonomy_term.ID" format. But creating content with specified ID could have conflicts and isn't a best practice. Modules that sync content (like Default Content and Structure Sync) use content UUID as key, also content with specific UUID could be safely created programmatically.
Changing the config name to "tvi.taxonomy_term.UUID" would allow safely sync config and content across environments.
Active
2.0
Code
Here is the first version of patch that works with fresh installed module only (or you need re-config taxonomy term relations manually). Hook to rename existing configs need to be implemented in "HOOK_post_update_HOOK". I'm going to make the improvement a bit later.